Nick: What type of system are you using to make the trenches. Is it ion milling or rie plasma system? How deep are you etching in microns. Have you considered using a photoresist mask over the aluminum to protect it during the oxide etch. I have done some work with MicroChem corp with a special formula of their SU-8 resist and have found it to stand up to plasma real well. The secret is getting it off after use. Seems that the formulation they made for us was around 5 micron thick after processing. The selectivity for a process we do etching silicon was 40:1. The process to etch sio2 would be much less probably around 5:1 depending on the bias used but if you only have to protect 1 micron of aluminum it might work. Setting up a process to convert Al into Al203 using plasma probably won't yield the results you are looking for. I also agree that wet anodizing would be a problem to control. Drop me a line with a little more detail and I will try to help. Bob Henderson 480-558-1156